Got a new problem, I havent spent a lot of time on.

Its goofy,
With all of my electrical items I have added to my truck it has a new issue.

When I use my remote starter, occasionally I get a flashing ABS light.
The brakes are new, the fluid level is good, and if you reboot it, it passes and the light goes out. It seems to have started after I installed my Scangage II, and it happens usually with the remote start. I think it did happen once with the key. It does not log a code, and the abs works great when the light is off.
The light goes out after a while when it fails, but it comes back on when you step on the brakes.

any ideas?

 

Assuming everything's OK with your brakes ....

There's a known issue with ScanGauge II's triggering the ABS warning light - dating back years.