So I put the factory speakers back in. I didn't put the tweeters back in. I left the speakerwire for the tweeters unconnected because I don't have the factory tweeters anymore. The door speakers work, but the windows do not. I checked the plugs, they are plugged in. The power locks work. I think I checked the fuse but I'm not sure if it was the right one. Any knowledge would be awesome. I'm working on it tonight.
I'm thinking I should run the wire from the tweater into the door speaker