I know I cant be the only one who has had the same problem with Itunes so here ya go.
This is a clean up/fixes your songs/deletes duplicates program for Itunes and windows media.
It normally costs $50 bucks for a lifetime or $40 for a year. I bought the lifetime package with a discount coupon. This link will take 15% off your total cost.
I just figured I would pass on the deal to any Itunes users with multiple copies of the same songs.
If anyone uses it or likes it let me know. Or if you have a better option feel free to post it up.