2007 tacoma question please

Recently got from a friend a 2007 tacoma ext cab, my second Tacoma, love them.
When it rains, it has two water leaks on the front sides, driver and passenger, run through the sides.
Checked the drain holes, not clogged, went crazy sealing all around the windshield with silicone, but I noticed still leaks. Any ideas?
Thank you in advance.

 

Does it leak just sitting when parked?

 

I haven’t used much, its mostly parked for now, after strong rain, I checked and it has water inside.

 

You may have a seam leaker:

This may help, I know it is for the 2005 model, but many later years also have this issue too:

Here is an updated link to the TSB:

Here is the TSB for the seam leaks: https://www.tacomaworld.com/attachments/bo00405r-05-leak-pdf.1051900/

 

Will check that.
Thx

m

 

Is that a bondo repair with a crack in the last picture,maybe it's leaking water in that area.

 

Check the roof rack weather stripping?