Manual trans will not fully go into gear

Fourth gear is 1 to 1 i.e. direct. See what happens in fourth.

 

Same issue with 4th gear. I tried all the gears, going to take off the shifter housing and shift with a screwdriver to see if that works.

 

Used a screwdriver and put the trans into gear. There is no click noise while in neutral, but there is still the noise when I spin the trans while in gear. Now, when I spin the output shaft from the transfer case, it makes a loud clicking noise. I am going home for spring break, but I am still interested in what y'all might think the issue is.